Stem-loop ssa-mir-30e-1

Accession

MI0026683

Description

Salmo salar ssa-mir-30e-1 precursor miRNA

Gene family

MIPF0000005; mir-30

Literature search

3 open access papers mention ssa-mir-30e-1
(3 sentences)

Sequence

UGUAAACAUCCUACACUCAGCUgugaguuggcagcagaggCUGGGAGAAGGCUGUUUACUUU
.((((((((((((..(((.(((((......))))).)))..)))))......)))))))...

Structure

--U       ------     CA   A     ga 
   GUAAACA      UCCUA  CUC GCUgu  g
   |||||||      |||||  ||| |||||   
   CAUUUGU      AGGGU  gag cgacg  u
UUU       CGGAAG     Cg   a     gu 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-30e-5p

• Accession: MIMAT0032611
• Description: Salmo salar ssa-miR-30e-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUACACUCAGCU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-30e-3p

• Accession: MIMAT0032612
• Description: Salmo salar ssa-miR-30e-3p mature miRNA
• Sequence: 41 - CUGGGAGAAGGCUGUUUACUUU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482