miRBase entry: ssa-mir-338a-4

Stem-loop ssa-mir-338a-4


Accession
MI0026689
Description
Salmo salar ssa-mir-338a-4 precursor miRNA
Gene family
MIPF0000097; mir-338


Sequence

AACAACAUCCUGGUGCUGCCUGAGUgacucucaccaacUCCAGCAUCAGUGAUUUUGUUG
(((((.((((((((((((..((.((((...))))))....))))))))).))).))))).

Structure
-     C   -         --CC  A    c 
 AACAA AUC CUGGUGCUG    UG GUga  
 ||||| ||| |||||||||    || |||| u
 UUGUU UAG GACUACGAC    ac cacu  
G     U   U         CUca  -    c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-338a-3p

Accession MIMAT0032615
Description Salmo salar ssa-miR-338a-3p mature miRNA
Sequence 39 - UCCAGCAUCAGUGAUUUUGUUG - 60
Evidence experimental
Illumina [1]

Mature ssa-miR-338a-4-5p

Accession MIMAT0032617
Description Salmo salar ssa-miR-338a-4-5p mature miRNA
Sequence 1 - AACAACAUCCUGGUGCUGCCUGAGU - 25
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482