miRBase entry: ssa-mir-458

Stem-loop ssa-mir-458


Accession
MI0026708
Description
Salmo salar ssa-mir-458 precursor miRNA
Gene family
MIPF0000179; mir-458


Sequence

AGCGCCAUUUACAGAGCUAUAAgcaugaugguugucAUAGCUCUUUGAAUGGUACUGC
((.((((((((.((((((((..(((.......))).)))))))).)))))))).))..

Structure
--  C        C        AA   ug 
  AG GCCAUUUA AGAGCUAU  gca  a
  || |||||||| ||||||||  |||  u
  UC UGGUAAGU UCUCGAUA  ugu  g
CG  A        U        -c   ug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-458-5p

Accession MIMAT0032647
Description Salmo salar ssa-miR-458-5p mature miRNA
Sequence 1 - AGCGCCAUUUACAGAGCUAUAA - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-458-3p

Accession MIMAT0032648
Description Salmo salar ssa-miR-458-3p mature miRNA
Sequence 37 - AUAGCUCUUUGAAUGGUACUGC - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482