Stem-loop ssa-let-7a-3

Accession

MI0026741

Description

Salmo salar ssa-let-7a-3 precursor miRNA

Literature search

2 open access papers mention ssa-let-7a-3
(6 sentences)

Sequence

UGAGGUAGUAGGUUGUAUAGUUuuagggucauacccuuccugucagauaaCUAUACAACUUACUGUCUUUCC
.(((((((((((((((((((((..(((((...)))))...........)))))))))))))))))))))...

Structure

--U                     ---------uu     c 
   GAGGUAGUAGGUUGUAUAGUU           agggu  
   |||||||||||||||||||||           ||||| a
   UUCUGUCAUUCAACAUAUCaa           uccca  
CCU                     uagacuguccu     u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-let-7a-5p

• Accession: MIMAT0032688
• Description: Salmo salar ssa-let-7a-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-let-7a-3-3p

• Accession: MIMAT0032690
• Description: Salmo salar ssa-let-7a-3-3p mature miRNA
• Sequence: 51 - CUAUACAACUUACUGUCUUUCC - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482