miRBase entry: ssa-let-7a-3

Stem-loop ssa-let-7a-3


Accession
MI0026741
Description
Salmo salar ssa-let-7a-3 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
2 open access papers mention ssa-let-7a-3
(6 sentences)

Sequence

UGAGGUAGUAGGUUGUAUAGUUuuagggucauacccuuccugucagauaaCUAUACAACUUACUGUCUUUCC
.(((((((((((((((((((((..(((((...)))))...........)))))))))))))))))))))...

Structure
--U                     ---------uu     c 
   GAGGUAGUAGGUUGUAUAGUU           agggu  
   |||||||||||||||||||||           ||||| a
   UUCUGUCAUUCAACAUAUCaa           uccca  
CCU                     uagacuguccu     u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-let-7a-5p

Accession MIMAT0032688
Description Salmo salar ssa-let-7a-5p mature miRNA
Sequence 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
Evidence experimental
Illumina [1]

Mature ssa-let-7a-3-3p

Accession MIMAT0032690
Description Salmo salar ssa-let-7a-3-3p mature miRNA
Sequence 51 - CUAUACAACUUACUGUCUUUCC - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482