miRBase entry: ssa-let-7a-4

Stem-loop ssa-let-7a-4


Accession
MI0026743
Description
Salmo salar ssa-let-7a-4 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
2 open access papers mention ssa-let-7a-4
(6 sentences)

Sequence

UGAGGUAGUAGGUUGUAUAGUUugugggagggauuuaauccuauucaggugauaaCUAUACAGUCUAUUGCCUUCCU
.((((((((((((((((((((((.((((.(((((...))))).)))).)....)))))))))))))))))))))...

Structure
--U                     ---- g    a     u 
   GAGGUAGUAGGUUGUAUAGUU    u uggg gggau  
   |||||||||||||||||||||    | |||| ||||| u
   UUCCGUUAUCUGACAUAUCaa    g acuu uccua  
UCC                     uagu g    a     a 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-let-7a-5p

Accession MIMAT0032688
Description Salmo salar ssa-let-7a-5p mature miRNA
Sequence 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
Evidence experimental
Illumina [1]

Mature ssa-let-7a-4-3p

Accession MIMAT0032691
Description Salmo salar ssa-let-7a-4-3p mature miRNA
Sequence 56 - CUAUACAGUCUAUUGCCUUCCU - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482