miRBase entry: ssa-let-7e-1

Stem-loop ssa-let-7e-1


Accession
MI0026756
Description
Salmo salar ssa-let-7e-1 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
2 open access papers mention ssa-let-7e-1
(5 sentences)

Sequence

UGAGGUAGUAGAUUGAAUAGUUgugggguauauguccucccucugacauaaCUAUACAAUCUACUGUCUUUCC
.((((((((((((((.((((((((((((..........))).....))))))))).))))))))))))))...

Structure
--U              A         -----   uaua 
   GAGGUAGUAGAUUG AUAGUUgug     ggg    u
   |||||||||||||| |||||||||     |||     
   UUCUGUCAUCUAAC UAUCaauac     ccc    g
CCU              A         agucu   uccu 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-let-7e-5p

Accession MIMAT0032705
Description Salmo salar ssa-let-7e-5p mature miRNA
Sequence 1 - UGAGGUAGUAGAUUGAAUAGUU - 22
Evidence experimental
Illumina [1]

Mature ssa-let-7e-3p

Accession MIMAT0032706
Description Salmo salar ssa-let-7e-3p mature miRNA
Sequence 52 - CUAUACAAUCUACUGUCUUUCC - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482