Stem-loop ssa-mir-93a-2

Accession

MI0026764

Description

Salmo salar ssa-mir-93a-2 precursor miRNA

Gene family

MIPF0000001; mir-17

Literature search

1 open access papers mention ssa-mir-93a-2
(9 sentences)

Sequence

AAAAGUGCUGUUUGUGCAGGUAGcugacucacccgcccuACUGCAAAACCAGCACUUCCCGA
..((((((((.((.(((((...((.(......).))....))))).)).)))))))).....

Structure

---AA        U  G     -GUA  u ac 
     AAGUGCUG UU UGCAG    Gc g  u
     |||||||| || |||||    || |   
     UUCACGAC AA ACGUC    cg c  c
AGCCC        C  A     Aucc  c ca 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-93a-5p

• Accession: MIMAT0032713
• Description: Salmo salar ssa-miR-93a-5p mature miRNA
• Sequence: 1 - AAAAGUGCUGUUUGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-93a-2-3p

• Accession: MIMAT0032715
• Description: Salmo salar ssa-miR-93a-2-3p mature miRNA
• Sequence: 40 - ACUGCAAAACCAGCACUUCCCGA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482