Stem-loop ssa-mir-96-1

Accession

MI0026765

Description

Salmo salar ssa-mir-96-1 precursor miRNA

Gene family

MIPF0000072; mir-96

Sequence

UUUGGCACUAGCACAUUUUUGCUucuguauauaugcuuugagCAAUCAUGUGUAGUGCCAAUAU
.(((((((((.(((((..((((((..(((....)))...))))))..))))))))))))))...

Structure

--U         G     UU      -cu   u 
   UUGGCACUA CACAU  UUGCUu   gua a
   ||||||||| |||||  ||||||   |||  
   AACCGUGAU GUGUA  AACgag   cgu u
UAU         -     CU      uuu   a 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-96-5p

• Accession: MIMAT0032716
• Description: Salmo salar ssa-miR-96-5p mature miRNA
• Sequence: 1 - UUUGGCACUAGCACAUUUUUGCU - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-96-3p

• Accession: MIMAT0032717
• Description: Salmo salar ssa-miR-96-3p mature miRNA
• Sequence: 43 - CAAUCAUGUGUAGUGCCAAUAU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482