miRBase entry: ssa-mir-9a-5

Stem-loop ssa-mir-9a-5


Accession
MI0026773
Description
Salmo salar ssa-mir-9a-5 precursor miRNA
Gene family
MIPF0000014; mir-9


Sequence

UCUUUGGUUAUCUAGCUGUAUGAguguuaaauaccugucAUAAAGCUAGAUAACCGAAAGU
..(((((((((((((((.(((((((((...))))...))))).)))))))))))))))...

Structure
-UC               G     ---    u 
   UUUGGUUAUCUAGCU UAUGA   gugu  
   ||||||||||||||| |||||   |||| a
   AAGCCAAUAGAUCGA AUAcu   caua  
UGA               A     guc    a 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-9a-5p

Accession MIMAT0032721
Description Salmo salar ssa-miR-9a-5p mature miRNA
Sequence 1 - UCUUUGGUUAUCUAGCUGUAUGA - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-9a-5-3p

Accession MIMAT0032726
Description Salmo salar ssa-miR-9a-5-3p mature miRNA
Sequence 40 - AUAAAGCUAGAUAACCGAAAGU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482