miRBase entry: ath-MIR8173

Stem-loop ath-MIR8173


Accession
MI0026803
Description
Arabidopsis thaliana ath-MIR8173 precursor miRNA


Sequence

uucuuuuaccucaaucagcaucacuaaucuucauaguuguuaccaacgagcuguuggcccaaugguaaaucuccuagguagAUGUGCUGAUUCGAGGUGGGAggg
.((((((((((((((((((((.....((((...(((...((((((..(.(((...))).)..)))))).....)))...))))))))))))).))))))))))).

Structure
u           -         cacua    uca   --uug      ac a   g 
 ucuuuuaccuc aaucagcau     aucu   uag     uuacca  g gcu  
 ||||||||||| |||||||||     ||||   |||     ||||||  | ||| u
 ggAGGGUGGAG UUAGUCGUG     UAga   auc     aauggu  c cgg  
g           C         -----    ugg   cucua      aa c   u 


Annotation confidence Not enough data
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Genome context
chr5: 7478569-7478673 [-]

Database links

Mature ath-miR8173

Accession MIMAT0032772
Description Arabidopsis thaliana ath-miR8173 mature miRNA
Sequence 82 - AUGUGCUGAUUCGAGGUGGGA - 102
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24119003
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
    Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
    BMC Genomics (2013) 14:701