miRBase entry: ppc-mir-2251b

Stem-loop ppc-mir-2251b


Accession
MI0026851
Description
Pristionchus pacificus ppc-mir-2251b precursor miRNA


Sequence

AUCUCCAUAAAUCCCGGUUUUAUCacgaauugaagugaUAACUGGGAUUCUGUGGAGAUCU
((((((((((((((((((..((((((........))))))))))))))).)))))))))..

Structure
--         -         UU      gaa 
  AUCUCCAUA AAUCCCGGU  UAUCac   u
  ||||||||| |||||||||  ||||||    
  UAGAGGUGU UUAGGGUCA  AUagug   u
UC         C         --      aag 


Annotation confidence Not enough data
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Genome context
ABKE03000093.1: 9033408-9033468 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppc-mir-2251b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-2251b-5p

Accession MIMAT0032848
Description Pristionchus pacificus ppc-miR-2251b-5p mature miRNA
Sequence 1 - AUCUCCAUAAAUCCCGGUUUUAUC - 24
Evidence experimental
Illumina [1], SOLiD [1]

Mature ppc-miR-2251b-3p

Accession MIMAT0032849
Description Pristionchus pacificus ppc-miR-2251b-3p mature miRNA
Sequence 39 - UAACUGGGAUUCUGUGGAGAUCU - 61
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260