Stem-loop ppc-mir-235

Accession

MI0026854

Description

Pristionchus pacificus ppc-mir-235 precursor miRNA

Gene family

MIPF0000013; mir-25

Sequence

AGGCCGCGGUCGGAUGCCAUGUUcgcacagucgaagcguaaUAUUGCACUCGUCCCGGCCUGA
((((((.((.(((.(((.((((((((.........))).))))).))).))).))))))))..

Structure

--      C  U   A   C     -   aca 
  AGGCCG GG CGG UGC AUGUU cgc   g
  |||||| || ||| ||| ||||| |||   u
  UCCGGC CC GCU ACG UAUaa gcg   c
AG      -  U   C   U     u   aag 

Annotation confidence Not enough data

Genome context

ABKE03000090.1: 3355564-3355626 [+]

Mature ppc-miR-235-5p

• Accession: MIMAT0032854
• Description: Pristionchus pacificus ppc-miR-235-5p mature miRNA
• Sequence: 1 - AGGCCGCGGUCGGAUGCCAUGUU - 23
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-235-3p

• Accession: MIMAT0032855
• Description: Pristionchus pacificus ppc-miR-235-3p mature miRNA
• Sequence: 42 - UAUUGCACUCGUCCCGGCCUGA - 63
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260