miRBase entry: ppc-mir-8220

Stem-loop ppc-mir-8220


Accession
MI0026864
Description
Pristionchus pacificus ppc-mir-8220 precursor miRNA


Sequence

AGGCGCUUGCCAGCUUUAUCCgcauugcaaucaaugaggcaggCUAAAGCUCGGCUAACGCCUCU
(((((...((((((((((.((((((((....))))...)).)).))))))).)))...)))))..

Structure
--     CUU   -       U  -  ---    c 
  AGGCG   GCC AGCUUUA CC gc   auug a
  |||||   ||| ||||||| || ||   ||||  
  UCCGC   CGG UCGAAAU gg cg   uaac a
UC     AAU   C       C  a  gag    u 


Annotation confidence Not enough data
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Genome context
ABKE03000131.1: 535946-536010 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from ppc-mir-8220
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8220-5p

Accession MIMAT0032874
Description Pristionchus pacificus ppc-miR-8220-5p mature miRNA
Sequence 1 - AGGCGCUUGCCAGCUUUAUCC - 21
Evidence experimental
Illumina [1], SOLiD [1]

Mature ppc-miR-8220-3p

Accession MIMAT0032875
Description Pristionchus pacificus ppc-miR-8220-3p mature miRNA
Sequence 44 - CUAAAGCUCGGCUAACGCCUCU - 65
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260