miRBase entry: ppc-mir-8223

Stem-loop ppc-mir-8223


Accession
MI0026869
Description
Pristionchus pacificus ppc-mir-8223 precursor miRNA


Sequence

CCGCUGAUUCGCUCAUAUCCUUgcauggaugcgaaUGAUAUGAGCCCACCAGCGAGA
.(((((....(((((((((.(((((....)))))..)))))))))....)))))...

Structure
--C     AUUC         -C     u 
   CGCUG    GCUCAUAUC  UUgca g
   |||||    |||||||||  |||||  
   GCGAC    CGAGUAUAG  agcgu g
AGA     CACC         Ua     a 


Annotation confidence Not enough data
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Genome context
ABKE03000073.1: 220630-220686 [+]
Clustered miRNAs
12 other miRNAs are < 10 kb from ppc-mir-8223
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8223-5p

Accession MIMAT0032884
Description Pristionchus pacificus ppc-miR-8223-5p mature miRNA
Sequence 1 - CCGCUGAUUCGCUCAUAUCCUU - 22
Evidence experimental
Illumina [1], SOLiD [1]

Mature ppc-miR-8223-3p

Accession MIMAT0032885
Description Pristionchus pacificus ppc-miR-8223-3p mature miRNA
Sequence 36 - UGAUAUGAGCCCACCAGCGAGA - 57
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260