miRBase entry: ppc-mir-8237

Stem-loop ppc-mir-8237


Accession
MI0026891
Description
Pristionchus pacificus ppc-mir-8237 precursor miRNA


Sequence

ACCUCGAGUUCUGGCGCUUUCGACCuacaugguggUUAAAGCUCGGUACUGGAGGUUC
(((((.(((.((((.(((((.((((........))))))))))))).))).)))))..

Structure
--     G   U    C     C    uac 
  ACCUC AGU CUGG GCUUU GACC   a
  ||||| ||| |||| ||||| ||||    
  UGGAG UCA GGCU CGAAA UUgg   u
CU     G   U    -     -    ugg 


Annotation confidence Not enough data
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Genome context
ABKE03000123.1: 3623630-3623687 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ppc-mir-8237
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8237-5p

Accession MIMAT0032928
Description Pristionchus pacificus ppc-miR-8237-5p mature miRNA
Sequence 1 - ACCUCGAGUUCUGGCGCUUUCGACC - 25
Evidence experimental
Illumina [1], SOLiD [1]

Mature ppc-miR-8237-3p

Accession MIMAT0032929
Description Pristionchus pacificus ppc-miR-8237-3p mature miRNA
Sequence 36 - UUAAAGCUCGGUACUGGAGGUUC - 58
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260