miRBase entry: ppc-mir-2238h

Stem-loop ppc-mir-2238h


Accession
MI0026892
Description
Pristionchus pacificus ppc-mir-2238h precursor miRNA
Gene family
MIPF0000822; mir-2238


Sequence

CCGUUCACUCAACUCGUCAGUCgauuauugaauuucgAAUGACAGUUCAGUGCGCGAGA
.(((.((((.((((.((((.((((..........)))).)))))))).)))).)))...

Structure
--C   U    C    C    G    uuau 
   CGU CACU AACU GUCA UCga    u
   ||| |||| |||| |||| ||||     
   GCG GUGA UUGA CAGU Agcu    g
AGA   C    C    -    A    uuaa 


Annotation confidence Not enough data
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Genome context
ABKE03000093.1: 9109494-9109552 [-]

Database links

Mature ppc-miR-2238h-5p

Accession MIMAT0032930
Description Pristionchus pacificus ppc-miR-2238h-5p mature miRNA
Sequence 1 - CCGUUCACUCAACUCGUCAGUC - 22
Evidence experimental
Illumina [1], SOLiD [1]

Mature ppc-miR-2238h-3p

Accession MIMAT0032931
Description Pristionchus pacificus ppc-miR-2238h-3p mature miRNA
Sequence 38 - AAUGACAGUUCAGUGCGCGAGA - 59
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260