miRBase entry: ppc-mir-8240

Stem-loop ppc-mir-8240


Accession
MI0026895
Description
Pristionchus pacificus ppc-mir-8240 precursor miRNA


Sequence

UGUGGGAGCGUGUGGACAGUAUCgaucguauugcgcagagaUUUGUUCGCUUCGCUCGCACAGA
((((.(((((.((((((((.(((..((((...))).)..)))))))))))..))))).))))..

Structure
--    G     -U        U   ga -   a 
  UGUG GAGCG  GUGGACAG AUC  u cgu  
  |||| |||||  |||||||| |||  | ||| u
  ACAC CUCGC  CGCUUGUU Uag  a gcg  
AG    G     UU        -   ag c   u 


Annotation confidence Not enough data
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Genome context
ABKE03000122.1: 2221371-2221434 [-]

Database links

Mature ppc-miR-8240-5p

Accession MIMAT0032936
Description Pristionchus pacificus ppc-miR-8240-5p mature miRNA
Sequence 1 - UGUGGGAGCGUGUGGACAGUAUC - 23
Evidence experimental
Illumina [1], SOLiD [1]

Mature ppc-miR-8240-3p

Accession MIMAT0032937
Description Pristionchus pacificus ppc-miR-8240-3p mature miRNA
Sequence 42 - UUUGUUCGCUUCGCUCGCACAGA - 64
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260