miRBase entry: ppc-mir-8241

Stem-loop ppc-mir-8241


Accession
MI0026896
Description
Pristionchus pacificus ppc-mir-8241 precursor miRNA


Sequence

UAUGACACCAUAUGGCUAUUUCGaguguucuucucaucucuAGAUCUCCAUUGGUGUCAUUCC
.(((((((((.((((..((((.(((((.......)).))).))))..)))))))))))))...

Structure
--U         U    CU    C   -  uu 
   AUGACACCA AUGG  AUUU Gag ug  c
   ||||||||| ||||  |||| ||| ||  u
   UACUGUGGU UACC  UAGA cuc ac  u
CCU         -    UC    u   u  uc 


Annotation confidence Not enough data
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Genome context
ABKE03000092.1: 347184-347246 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppc-mir-8241
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8241-5p

Accession MIMAT0032938
Description Pristionchus pacificus ppc-miR-8241-5p mature miRNA
Sequence 1 - UAUGACACCAUAUGGCUAUUUCG - 23
Evidence experimental
Illumina [1], SOLiD [1]

Mature ppc-miR-8241-3p

Accession MIMAT0032939
Description Pristionchus pacificus ppc-miR-8241-3p mature miRNA
Sequence 42 - AGAUCUCCAUUGGUGUCAUUCC - 63
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260