miRBase entry: ppc-mir-312b

Stem-loop ppc-mir-312b


Accession
MI0026899
Description
Pristionchus pacificus ppc-mir-312b precursor miRNA


Sequence

CACUAUCUCCUUGUCGUCAUGCGugauaugcaauucgUAUGGCACAUCGAGACGGAGAA
.....(((((.(.(((..(((.((.(((((.....))))).)).)))))).).))))).

Structure
CACUA     U G   UC   C  g     c 
     UCUCC U UCG  AUG Gu auaug a
     ||||| | |||  ||| || ||||| a
     AGAGG A AGC  UAC CG UAUgc u
----A     C G   --   A  G     u 


Annotation confidence Not enough data
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Genome context
ABKE03000028.1: 1955182-1955240 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppc-mir-312b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-312b-5p

Accession MIMAT0032944
Description Pristionchus pacificus ppc-miR-312b-5p mature miRNA
Sequence 1 - CACUAUCUCCUUGUCGUCAUGCG - 23
Evidence experimental
Illumina [1], SOLiD [1]

Mature ppc-miR-312b-3p

Accession MIMAT0032945
Description Pristionchus pacificus ppc-miR-312b-3p mature miRNA
Sequence 38 - UAUGGCACAUCGAGACGGAGAA - 59
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260