Stem-loop ppc-mir-8243

Accession

MI0026900

Description

Pristionchus pacificus ppc-mir-8243 precursor miRNA

Sequence

UCACCGGGAGCAGAGUGGCUACggccccucagagccgaccuuucgcuucgaucugagcuggugccugcCACAUAGUGACUCCCGGUAACC
..((((((((((..(((((...(((((((((((..(((.........))).))))))..)).))).)))))....)).))))))))....

Structure

--UC        -  --GA     UAC   -  --      gc   ccu 
    ACCGGGAG CA    GUGGC   ggc cc  cucaga  cga   u
    |||||||| ||    |||||   ||| ||  ||||||  |||   u
    UGGCCCUC GU    CACcg   ccg gg  gagucu  gcu   c
CCAA        A  GAUA     --u   u  uc      -a   ucg 

Annotation confidence Not enough data

Genome context

Unknown

Mature ppc-miR-8243-5p

• Accession: MIMAT0032946
• Description: Pristionchus pacificus ppc-miR-8243-5p mature miRNA
• Sequence: 1 - UCACCGGGAGCAGAGUGGCUAC - 22
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8243-3p

• Accession: MIMAT0032947
• Description: Pristionchus pacificus ppc-miR-8243-3p mature miRNA
• Sequence: 69 - CACAUAGUGACUCCCGGUAACC - 90
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260