miRBase entry: ppc-mir-2235c

Stem-loop ppc-mir-2235c


Accession
MI0026902
Description
Pristionchus pacificus ppc-mir-2235c precursor miRNA


Sequence

CCACCCAGUCCGCUCGGUCUGAACcauucccgaaaguguguUCACCGGGAGUAUUGCGUGAUC
.(((.((((.(.((((((..((((((((......)))).)))))))))).).)))).)))...

Structure
--C   C    C G      CU    -    cc 
   CAC CAGU C CUCGGU  GAAC cauu  c
   ||| |||| | ||||||  |||| ||||   
   GUG GUUA G GGGCCA  CUug guga  g
CUA   C    U A      --    u    aa 


Annotation confidence Not enough data
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Genome context
ABKE03000123.1: 3623214-3623276 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ppc-mir-2235c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-2235c-5p

Accession MIMAT0032950
Description Pristionchus pacificus ppc-miR-2235c-5p mature miRNA
Sequence 1 - CCACCCAGUCCGCUCGGUCUGAAC - 24
Evidence experimental
Illumina [1], SOLiD [1]

Mature ppc-miR-2235c-3p

Accession MIMAT0032951
Description Pristionchus pacificus ppc-miR-2235c-3p mature miRNA
Sequence 42 - UCACCGGGAGUAUUGCGUGAUC - 63
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260