miRBase entry: ppc-mir-8249

Stem-loop ppc-mir-8249


Accession
MI0026908
Description
Pristionchus pacificus ppc-mir-8249 precursor miRNA


Sequence

ACCGGCUCCUCGUUGCCUUAUUcgccggucgugaaUAAGGCACCCAGGACUUGGCGA
.((((.((((.(.((((((((((((.....)))))))))))).).)))).))))...

Structure
--A    C    C U            c 
   CCGG UCCU G UGCCUUAUUcgc g
   |||| |||| | |||||||||||| g
   GGUU AGGA C ACGGAAUaagug u
AGC    C    C C            c 


Annotation confidence Not enough data
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Genome context
ABKE03000028.1: 1907126-1907182 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from ppc-mir-8249
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8249-5p

Accession MIMAT0032962
Description Pristionchus pacificus ppc-miR-8249-5p mature miRNA
Sequence 1 - ACCGGCUCCUCGUUGCCUUAUU - 22
Evidence experimental
Illumina [1], SOLiD [1]

Mature ppc-miR-8249-3p

Accession MIMAT0032963
Description Pristionchus pacificus ppc-miR-8249-3p mature miRNA
Sequence 36 - UAAGGCACCCAGGACUUGGCGA - 57
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260