Stem-loop ppc-mir-8250a-1

Accession

MI0026909

Description

Pristionchus pacificus ppc-mir-8250a-1 precursor miRNA

Gene family

MIPF0002067; mir-8250

Sequence

CUCUCUAUUUGCCUGGAUUCGAUUGuaauugagaucaAUCUCCAGUCAUAAUGGGGGGGA
(((((((((((.(((((...(((((..........)))))))))).)).)))))))))..

Structure

--         -  C     UUC     uaau 
  CUCUCUAUU UG CUGGA   GAUUG    u
  ||||||||| || |||||   |||||     
  GGGGGGUAA AC GACCU   CUAac    g
AG         U  U     ---     uaga 

Annotation confidence Not enough data

Genome context

ABKE03000008.1: 1294937-1294996 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-8250a-1

Mature ppc-miR-8250a-5p

• Accession: MIMAT0032964
• Description: Pristionchus pacificus ppc-miR-8250a-5p mature miRNA
• Sequence: 1 - CUCUCUAUUUGCCUGGAUUCGAUUG - 25
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8250a-3p

• Accession: MIMAT0032965
• Description: Pristionchus pacificus ppc-miR-8250a-3p mature miRNA
• Sequence: 38 - AUCUCCAGUCAUAAUGGGGGGGA - 60
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260