miRBase entry: ppc-mir-8253

Stem-loop ppc-mir-8253


Accession
MI0026914
Description
Pristionchus pacificus ppc-mir-8253 precursor miRNA


Sequence

UGUUGAAGACUGCAUCUCGAGCguagaaucaccuuUCGAAAUGUAUCUCUUCCACAUA
(((.(((((.(((((.(((((.((......))..))))).)))))..))))).)))..

Structure
--   U     -C     C     -C  ag 
  UGU GAAGA  UGCAU UCGAG  gu  a
  ||| |||||  ||||| |||||  ||   
  ACA CUUCU  AUGUA AGCUu  ca  a
AU   C     CU     A     uc  cu 


Annotation confidence Not enough data
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Genome context
ABKE03000003.1: 125073-125130 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from ppc-mir-8253
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8253-5p

Accession MIMAT0032974
Description Pristionchus pacificus ppc-miR-8253-5p mature miRNA
Sequence 1 - UGUUGAAGACUGCAUCUCGAGC - 22
Evidence experimental
Illumina [1], SOLiD [1]

Mature ppc-miR-8253-3p

Accession MIMAT0032975
Description Pristionchus pacificus ppc-miR-8253-3p mature miRNA
Sequence 36 - UCGAAAUGUAUCUCUUCCACAUA - 58
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260