miRBase entry: ppc-mir-8255

Stem-loop ppc-mir-8255


Accession
MI0026916
Description
Pristionchus pacificus ppc-mir-8255 precursor miRNA


Sequence

UAUGCCCCGCGUCAAGGAUCAACUucgaugaugauaagUUGGCCCAUGACUGGAGGUAUAGC
(((((((((.((((.((.((((((((......))..)))))).)).))))))).))))))..

Structure
--      -   C    A  A      --  ga 
  UAUGCC CCG GUCA GG UCAACU  uc  u
  |||||| ||| |||| || ||||||  ||   
  AUAUGG GGU CAGU CC GGUUga  ag  g
CG      A   -    A  C      au  ua 


Annotation confidence Not enough data
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Genome context
ABKE03000073.1: 237101-237162 [-]
Clustered miRNAs
9 other miRNAs are < 10 kb from ppc-mir-8255
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8255-5p

Accession MIMAT0032978
Description Pristionchus pacificus ppc-miR-8255-5p mature miRNA
Sequence 1 - UAUGCCCCGCGUCAAGGAUCAACU - 24
Evidence experimental
Illumina [1], SOLiD [1]

Mature ppc-miR-8255-3p

Accession MIMAT0032979
Description Pristionchus pacificus ppc-miR-8255-3p mature miRNA
Sequence 39 - UUGGCCCAUGACUGGAGGUAUAGC - 62
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260