miRBase entry: ppc-mir-8258

Stem-loop ppc-mir-8258


Accession
MI0026919
Description
Pristionchus pacificus ppc-mir-8258 precursor miRNA


Sequence

ACGCUCAUUCAAGACCAUGACAcggcaauaaacgaugUCAUGAUCUUGAUCGGGUGCCA
.(((((..((((((.(((((((((........)).))))))).))))))..)))))...

Structure
--A     AU      C       -  gca 
   CGCUC  UCAAGA CAUGACA cg   a
   |||||  |||||| ||||||| ||    
   GUGGG  AGUUCU GUACUgu gc   u
ACC     CU      A       a  aaa 


Annotation confidence Not enough data
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Genome context
ABKE03000094.1: 924361-924419 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppc-mir-8258
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8258-5p

Accession MIMAT0032984
Description Pristionchus pacificus ppc-miR-8258-5p mature miRNA
Sequence 1 - ACGCUCAUUCAAGACCAUGACA - 22
Evidence experimental
Illumina [1], SOLiD [1]

Mature ppc-miR-8258-3p

Accession MIMAT0032985
Description Pristionchus pacificus ppc-miR-8258-3p mature miRNA
Sequence 38 - UCAUGAUCUUGAUCGGGUGCCA - 59
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260