Stem-loop ppc-mir-8260

Accession

MI0026922

Description

Pristionchus pacificus ppc-mir-8260 precursor miRNA

Sequence

UCCCAGUACUCUCUCCCUCAUUacuaucagaauaACGAGGGCUAGAGUACUAGGUGA
((((((((((((..(((((.(((.........))).)))))..)))))))).)).))

Structure

  -  -        CU     A   cua 
UC CC AGUACUCU  CCCUC UUa   u
|| || ||||||||  ||||| |||   c
AG GG UCAUGAGA  GGGAG Aau   a
  U  A        UC     C   aag 

Annotation confidence Not enough data

Genome context

ABKE03000028.1: 1975351-1975407 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-8260

Mature ppc-miR-8260-5p

• Accession: MIMAT0032989
• Description: Pristionchus pacificus ppc-miR-8260-5p mature miRNA
• Sequence: 1 - UCCCAGUACUCUCUCCCUCAUU - 22
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8260-3p

• Accession: MIMAT0032990
• Description: Pristionchus pacificus ppc-miR-8260-3p mature miRNA
• Sequence: 35 - ACGAGGGCUAGAGUACUAGGUGA - 57
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260