miRBase entry: ppc-mir-8250d

Stem-loop ppc-mir-8250d


Accession
MI0026924
Description
Pristionchus pacificus ppc-mir-8250d precursor miRNA
Gene family
MIPF0002067; mir-8250


Sequence

UCCUUUAUUUGUCUGGAUCGGAUUGuuauuugaaucaAUCUCCAGAUAUAAUGAGGGAAA
(((((((((((((((((...(((((..........))))))))))))).)))))))))..

Structure
--         -        UCG     uuau 
  UCCUUUAUU UGUCUGGA   GAUUG    u
  ||||||||| ||||||||   |||||     
  AGGGAGUAA AUAGACCU   CUAac    u
AA         U        ---     uaag 


Annotation confidence Not enough data
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Genome context
ABKE03000008.1: 1297758-1297817 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppc-mir-8250d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8250d-5p

Accession MIMAT0032993
Description Pristionchus pacificus ppc-miR-8250d-5p mature miRNA
Sequence 1 - UCCUUUAUUUGUCUGGAUCGGAUUG - 25
Evidence experimental
Illumina [1], SOLiD [1]

Mature ppc-miR-8250d-3p

Accession MIMAT0032994
Description Pristionchus pacificus ppc-miR-8250d-3p mature miRNA
Sequence 38 - AUCUCCAGAUAUAAUGAGGGAAA - 60
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260