miRBase entry: ppc-mir-2253d

Stem-loop ppc-mir-2253d


Accession
MI0026929
Description
Pristionchus pacificus ppc-mir-2253d precursor miRNA
Gene family
MIPF0000915; mir-2253


Sequence

CGGAGUUUCAACAGGCCAUACAacucgcguaugCAUGGCACUGCUGAAACUUCGAA
((((((((((.((((((((.((((....)).)).))))).))).))))))))))..

Structure
--          A   -     A  -  u 
  CGGAGUUUCA CAG GCCAU CA ac c
  |||||||||| ||| ||||| || ||  
  GCUUCAAAGU GUC CGGUA gu ug g
AA          C   A     C  a  c 


Annotation confidence Not enough data
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Genome context
ABKE03000012.1: 1088106-1088161 [+]

Database links

Mature ppc-miR-2253d-5p

Accession MIMAT0033003
Description Pristionchus pacificus ppc-miR-2253d-5p mature miRNA
Sequence 1 - CGGAGUUUCAACAGGCCAUACA - 22
Evidence experimental
Illumina [1], SOLiD [1]

Mature ppc-miR-2253d-3p

Accession MIMAT0033004
Description Pristionchus pacificus ppc-miR-2253d-3p mature miRNA
Sequence 34 - CAUGGCACUGCUGAAACUUCGAA - 56
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260