miRBase entry: ppc-mir-63k

Stem-loop ppc-mir-63k

Accession

MI0026937

Description

Pristionchus pacificus ppc-mir-63k precursor miRNA

Sequence

CCGCUCACUUGUAGCGUCAUGGCccaucaauuggucuggugcUAUGACAUAAAAGUGAGCGAAG
.(((((((((.((..(((((((((((..........))).)))))))).)).)))))))))...

Structure

--C         G  GC        -   ucaa 
   CGCUCACUU UA  GUCAUGGC cca    u
   ||||||||| ||  |||||||| |||     
   GCGAGUGAA AU  CAGUAUcg ggu    u
GAA         A  -A        u   cugg

Annotation confidence Not enough data

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Genome context

ABKE03000028.1: 915983-916046 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-63k

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-63k-5p

Accession	MIMAT0033018
Description	Pristionchus pacificus ppc-miR-63k-5p mature miRNA
Sequence	1 - CCGCUCACUUGUAGCGUCAUGGC - 23
Evidence	experimental Illumina [1]

Mature ppc-miR-63k-3p

Accession	MIMAT0033019
Description	Pristionchus pacificus ppc-miR-63k-3p mature miRNA
Sequence	43 - UAUGACAUAAAAGUGAGCGAAG - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260