Stem-loop ppc-mir-2235a-11

Accession

MI0026945

Description

Pristionchus pacificus ppc-mir-2235a-11 precursor miRNA

Gene family

MIPF0000825; mir-2235

Sequence

UCAUUCAAUAUUGCCGGUUUGAACgaaauugaucaguUCACCGGGAGUUAUUGCUUGAUC
(((..(((((((.(((((..((((((......)).))))))))).)).)))))..)))..

Structure

--   UU     -  G     UU    -  aa 
  UCA  CAAUA UU CCGGU  GAAC ga  u
  |||  ||||| || |||||  |||| ||   
  AGU  GUUAU GA GGCCA  CUug cu  u
CU   UC     U  G     --    a  ag 

Annotation confidence Not enough data

Genome context

ABKE03000123.1: 4482054-4482113 [-]

Clustered miRNAs

10 other miRNAs are < 10 kb from ppc-mir-2235a-11

Mature ppc-miR-2235a-5p

• Accession: MIMAT0032107
• Description: Pristionchus pacificus ppc-miR-2235a-5p mature miRNA
• Sequence: 1 - UCAUUCAAUAUUGCCGGUUUGAAC - 24
• Evidence: experimental ; SOLiD [1]

Mature ppc-miR-2235a-11-3p

• Accession: MIMAT0033034
• Description: Pristionchus pacificus ppc-miR-2235a-11-3p mature miRNA
• Sequence: 38 - UCACCGGGAGUUAUUGCUUGAUC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260