miRBase entry: ppc-mir-8271

Stem-loop ppc-mir-8271


Accession
MI0026946
Description
Pristionchus pacificus ppc-mir-8271 precursor miRNA


Sequence

UAUCAGUCAUCUUCCCAGUAUAucgaaauagauggauaUACUGGAUAGAUAAGUGAUAGA
(((((.(.((((..((((((((((.(......).))))))))))..)))).).)))))..

Structure
--     G C    UC          g aa 
  UAUCA U AUCU  CCAGUAUAuc a  u
  ||||| | ||||  |||||||||| |   
  AUAGU A UAGA  GGUCAUauag u  a
AG     G A    UA          g ag 


Annotation confidence Not enough data
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Genome context
ABKE03000003.1: 124956-125015 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from ppc-mir-8271
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8271-5p

Accession MIMAT0033035
Description Pristionchus pacificus ppc-miR-8271-5p mature miRNA
Sequence 1 - UAUCAGUCAUCUUCCCAGUAUA - 22
Evidence experimental
Illumina [1]

Mature ppc-miR-8271-3p

Accession MIMAT0033036
Description Pristionchus pacificus ppc-miR-8271-3p mature miRNA
Sequence 39 - UACUGGAUAGAUAAGUGAUAGA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260