Stem-loop ppc-mir-2238k

Accession

MI0026947

Description

Pristionchus pacificus ppc-mir-2238k precursor miRNA

Gene family

MIPF0000822; mir-2238

Sequence

CCGUUCACUCUUCUCGUCAGUCGAugauugaaauucgAAUGACUGAACAGUGCGCGAGA
.(((.((((.(((..((((.((((..........)))).)))).))).)))).)))...

Structure

--C   U    C   UC    G    ugau 
   CGU CACU UUC  GUCA UCGA    u
   ||| |||| |||  |||| ||||     
   GCG GUGA AAG  CAGU Agcu    g
AGA   C    C   -U    A    uaaa 

Annotation confidence Not enough data

Genome context

ABKE03000060.1: 5254458-5254516 [-]

Mature ppc-miR-2238k-5p

• Accession: MIMAT0033037
• Description: Pristionchus pacificus ppc-miR-2238k-5p mature miRNA
• Sequence: 1 - CCGUUCACUCUUCUCGUCAGUCGA - 24
• Evidence: experimental ; SOLiD [1]

Mature ppc-miR-2238k-3p

• Accession: MIMAT0033038
• Description: Pristionchus pacificus ppc-miR-2238k-3p mature miRNA
• Sequence: 38 - AAUGACUGAACAGUGCGCGAGA - 59
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260