miRBase entry: ppc-mir-8274

Stem-loop ppc-mir-8274


Accession
MI0026952
Description
Pristionchus pacificus ppc-mir-8274 precursor miRNA


Sequence

UCGAGGACUUUCCAUUGUUCAUCuugacgaauggaUGAACUAUGAACCAGUGCUCGAGA
(((((.(((...(((.((((((((........)))))))).)))....))).)))))..

Structure
--     G   -UUC   U        uga 
  UCGAG ACU    CAU GUUCAUCu   c
  ||||| |||    ||| ||||||||    
  AGCUC UGA    GUA CAAGUagg   g
AG     G   CCAA   U        uaa 


Annotation confidence Not enough data
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Genome context
ABKE03000073.1: 234904-234962 [-]
Clustered miRNAs
14 other miRNAs are < 10 kb from ppc-mir-8274
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8274-5p

Accession MIMAT0033047
Description Pristionchus pacificus ppc-miR-8274-5p mature miRNA
Sequence 1 - UCGAGGACUUUCCAUUGUUCAUC - 23
Evidence experimental
Illumina [1]

Mature ppc-miR-8274-3p

Accession MIMAT0033048
Description Pristionchus pacificus ppc-miR-8274-3p mature miRNA
Sequence 36 - UGAACUAUGAACCAGUGCUCGAGA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260