miRBase entry: ppc-mir-8282a

Stem-loop ppc-mir-8282a


Accession
MI0026962
Description
Pristionchus pacificus ppc-mir-8282a precursor miRNA


Sequence

CCACCAAGAAUUGUGCCAUAUCUguauugcaaucagcUAUGAUAGUAUUCUUGGUGACA
.((((((((((..((.((((.(((.........))).)))).))..))))))))))...

Structure
--C          UG  C    U   uau 
   CACCAAGAAU  UG CAUA CUg   u
   ||||||||||  || |||| |||   g
   GUGGUUCUUA  AU GUAU gac   c
ACA          UG  A    c   uaa 


Annotation confidence Not enough data
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Genome context
ABKE03000073.1: 226753-226811 [+]
Clustered miRNAs
16 other miRNAs are < 10 kb from ppc-mir-8282a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8282a-5p

Accession MIMAT0033067
Description Pristionchus pacificus ppc-miR-8282a-5p mature miRNA
Sequence 1 - CCACCAAGAAUUGUGCCAUAUCU - 23
Evidence experimental
Illumina [1]

Mature ppc-miR-8282a-3p

Accession MIMAT0033068
Description Pristionchus pacificus ppc-miR-8282a-3p mature miRNA
Sequence 38 - UAUGAUAGUAUUCUUGGUGACA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260