miRBase entry: ppc-mir-8283

Stem-loop ppc-mir-8283

Accession

MI0026963

Description

Pristionchus pacificus ppc-mir-8283 precursor miRNA

Sequence

ACGCCAAUACCUUCCAGUUAGAAGguggucaucgcauuuugccuUCACCGGGAGAUAUUGGCGUCU
(((((((((.(((((.((..((((((((..........)))))))))).))))).)))))))))..

Structure

--         C     A  UA        ucau 
  ACGCCAAUA CUUCC GU  GAAGgugg    c
  ||||||||| ||||| ||  ||||||||     
  UGCGGUUAU GAGGG CA  CUuccguu    g
UC         A     C  --        uuac

Annotation confidence Not enough data

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Genome context

ABKE03000123.1: 3623101-3623166 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-8283

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8283-5p

Accession	MIMAT0033069
Description	Pristionchus pacificus ppc-miR-8283-5p mature miRNA
Sequence	1 - ACGCCAAUACCUUCCAGUUAGAAG - 24
Evidence	experimental Illumina [1]

Mature ppc-miR-8283-3p

Accession	MIMAT0033070
Description	Pristionchus pacificus ppc-miR-8283-3p mature miRNA
Sequence	45 - UCACCGGGAGAUAUUGGCGUCU - 66
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260