Stem-loop ppc-mir-8286a

Accession

MI0026967

Description

Pristionchus pacificus ppc-mir-8286a precursor miRNA

Gene family

MIPF0001964; mir-8286

Sequence

ACCGCACCAUGCUCUAUCCAUCucgaauugagugaguUGGCAAGAACUUUGGCACGGCCU
.(((..(((.(.(((..(((.((((.......)))).)))..))).)..)))..)))...

Structure

--A   CA   -U C   AU   U    aa 
   CCG  CCA  G UCU  CCA Cucg  u
   |||  |||  | |||  ||| ||||  u
   GGC  GGU  C AGA  GGU gagu  g
UCC   AC   UU A   AC   u    ga 

Annotation confidence Not enough data

Genome context

ABKE03000123.1: 4482612-4482671 [-]

Clustered miRNAs

12 other miRNAs are < 10 kb from ppc-mir-8286a

Mature ppc-miR-8286a-5p

• Accession: MIMAT0033077
• Description: Pristionchus pacificus ppc-miR-8286a-5p mature miRNA
• Sequence: 1 - ACCGCACCAUGCUCUAUCCAUC - 22
• Evidence: experimental ; SOLiD [1]

Mature ppc-miR-8286a-3p

• Accession: MIMAT0033078
• Description: Pristionchus pacificus ppc-miR-8286a-3p mature miRNA
• Sequence: 38 - UGGCAAGAACUUUGGCACGGCCU - 60
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260