miRBase entry: ppc-mir-8288

Stem-loop ppc-mir-8288


Accession
MI0026971
Description
Pristionchus pacificus ppc-mir-8288 precursor miRNA


Sequence

GCAUGGAACGUAUCGAUUCACCGuauacuugaaugaacggUGAAAGACACAUUCCAUGGGCAG
.(((((((.((.((..((((((((............)))))))).)).)).))))))).....

Structure
----G       C  A  GA        auacu 
     CAUGGAA GU UC  UUCACCGu     u
     ||||||| || ||  ||||||||      
     GUACCUU CA AG  AAGUggca     g
GACGG       A  C  -A        aguaa 


Annotation confidence Not enough data
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Genome context
ABKE03000003.1: 124844-124906 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from ppc-mir-8288
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8288-5p

Accession MIMAT0033085
Description Pristionchus pacificus ppc-miR-8288-5p mature miRNA
Sequence 1 - GCAUGGAACGUAUCGAUUCACCG - 23
Evidence experimental
SOLiD [1]

Mature ppc-miR-8288-3p

Accession MIMAT0033086
Description Pristionchus pacificus ppc-miR-8288-3p mature miRNA
Sequence 41 - UGAAAGACACAUUCCAUGGGCAG - 63
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260