miRBase entry: ppc-mir-8289

Stem-loop ppc-mir-8289


Accession
MI0026974
Description
Pristionchus pacificus ppc-mir-8289 precursor miRNA


Sequence

ACCGAGUACUCUGUUCCUAAUuggggcacaguccaagacaauUAGGAUAUGGUGCUACUCGGUGA
(((((((((.(((((((((((((((((...))))....))))))))).)))).).))))))))..

Structure
--        - U    -         ----    a 
  ACCGAGUA C CUGU UCCUAAUug    gggc  
  |||||||| | |||| |||||||||    |||| c
  UGGCUCAU G GGUA AGGAUuaac    ccug  
AG        C U    U         agaa    a 


Annotation confidence Not enough data
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Genome context
ABKE03000028.1: 1909032-1909096 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from ppc-mir-8289
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8289-5p

Accession MIMAT0033091
Description Pristionchus pacificus ppc-miR-8289-5p mature miRNA
Sequence 1 - ACCGAGUACUCUGUUCCUAAU - 21
Evidence experimental
Illumina [1]

Mature ppc-miR-8289-3p

Accession MIMAT0033092
Description Pristionchus pacificus ppc-miR-8289-3p mature miRNA
Sequence 43 - UAGGAUAUGGUGCUACUCGGUGA - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260