miRBase entry: ppc-mir-8292

Stem-loop ppc-mir-8292

Accession

MI0026978

Description

Pristionchus pacificus ppc-mir-8292 precursor miRNA

Sequence

UGUUUGGCCAGCUCGUGAUCGAcuucaugcggcggcucAAUCACUGGCCUGUCCAAACAGA
(((((((.(((((.(((((.((......((....)))).))))).)).))).)))))))..

Structure

--       C   -  C     C  cuucau  g 
  UGUUUGG CAG CU GUGAU GA      gc g
  ||||||| ||| || ||||| ||      ||  
  ACAAACC GUC GG CACUA cu      cg c
AG       U   C  U     A  ------  g

Annotation confidence Not enough data

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Genome context

ABKE03000104.1: 248338-248398 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-8292

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8292-5p

Accession	MIMAT0033097
Description	Pristionchus pacificus ppc-miR-8292-5p mature miRNA
Sequence	1 - UGUUUGGCCAGCUCGUGAUCGA - 22
Evidence	experimental Illumina [1]

Mature ppc-miR-8292-3p

Accession	MIMAT0033098
Description	Pristionchus pacificus ppc-miR-8292-3p mature miRNA
Sequence	39 - AAUCACUGGCCUGUCCAAACAGA - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260