miRBase entry: ppc-mir-8293

Stem-loop ppc-mir-8293


Accession
MI0026979
Description
Pristionchus pacificus ppc-mir-8293 precursor miRNA


Sequence

UCGGCCAAUUUAUCUUUCAGCcucauaacugaaggauggAUGAAAGAUAAAAGUGGUCGGCA
.((((((.(((((((((((.((((..........)).)).)))))))))))..))))))...

Structure
--U      -A           G  -  auaa 
   CGGCCA  UUUAUCUUUCA Cc uc    c
   ||||||  ||||||||||| || ||     
   GCUGGU  AAAUAGAAAGU gg ag    u
ACG      GA           A  u  gaag 


Annotation confidence Not enough data
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Genome context
ABKE03000052.1: 388705-388766 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppc-mir-8293
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8293-5p

Accession MIMAT0033099
Description Pristionchus pacificus ppc-miR-8293-5p mature miRNA
Sequence 1 - UCGGCCAAUUUAUCUUUCAGC - 21
Evidence experimental
Illumina [1]

Mature ppc-miR-8293-3p

Accession MIMAT0033100
Description Pristionchus pacificus ppc-miR-8293-3p mature miRNA
Sequence 40 - AUGAAAGAUAAAAGUGGUCGGCA - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260