miRBase entry: ppc-mir-8294

Stem-loop ppc-mir-8294


Accession
MI0026980
Description
Pristionchus pacificus ppc-mir-8294 precursor miRNA


Sequence

GCCGGCUCUGAUUGGUACUACAACUagaugcucuagUUAGUAACGAUCAGGGCGGUAGC
((((.(((((((((.(((((..((((((...))))))))))).)))))))))))))...

Structure
---    G         G     CA      u 
   GCCG CUCUGAUUG UACUA  ACUaga  
   |||| ||||||||| |||||  |||||| g
   UGGC GGGACUAGC AUGAU  Ugaucu  
CGA    -         A     --      c 


Annotation confidence Not enough data
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Genome context
ABKE03000048.1: 242162-242220 [+]

Database links

Mature ppc-miR-8294-5p

Accession MIMAT0033101
Description Pristionchus pacificus ppc-miR-8294-5p mature miRNA
Sequence 1 - GCCGGCUCUGAUUGGUACUACAACU - 25
Evidence experimental
SOLiD [1]

Mature ppc-miR-8294-3p

Accession MIMAT0033102
Description Pristionchus pacificus ppc-miR-8294-3p mature miRNA
Sequence 37 - UUAGUAACGAUCAGGGCGGUAGC - 59
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260