miRBase entry: ppc-mir-8297

Stem-loop ppc-mir-8297


Accession
MI0026985
Description
Pristionchus pacificus ppc-mir-8297 precursor miRNA


Sequence

AUUCCCUGCUUGGUGAUUGCUgguuuccuggcugacauaaccucuguuaggugcguuaaagagugaUUCCUUCGAGCAUCGAGAGCA
.....((.(((((((.(((..((..((((...((((...((((.....))))..))))...)).))..))..))).)))))))))..

Structure
AUUCC  G       A   CU  uu  -  ggc    aua    c 
     CU CUUGGUG UUG  gg  uc cu   ugac   accu u
     || ||||||| |||  ||  || ||   ||||   |||| g
     GA GAGCUAC AGC  CC  ag ga   auug   ugga u
---AC  -       G   UU  UU  u  gaa    -cg    u 


Annotation confidence Not enough data
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Genome context
ABKE03000100.1: 90727-90813 [-]

Database links

Mature ppc-miR-8297-5p

Accession MIMAT0033111
Description Pristionchus pacificus ppc-miR-8297-5p mature miRNA
Sequence 1 - AUUCCCUGCUUGGUGAUUGCU - 21
Evidence experimental
SOLiD [1]

Mature ppc-miR-8297-3p

Accession MIMAT0033112
Description Pristionchus pacificus ppc-miR-8297-3p mature miRNA
Sequence 67 - UUCCUUCGAGCAUCGAGAGCA - 87
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260