miRBase entry: ppc-mir-8303-1

Stem-loop ppc-mir-8303-1


Accession
MI0026993
Description
Pristionchus pacificus ppc-mir-8303-1 precursor miRNA
Gene family
MIPF0002121; mir-8303


Sequence

AAGCUGACGGGGUGUAAUGACAaucauaugacgaugUCAAUGCACCGCGUUGGCUCCA
.((((((((.((((((.(((((.((.......))))))).)))))).))))))))...

Structure
--A        G      A     a  au 
   AGCUGACG GGUGUA UGACA uc  a
   |||||||| |||||| ||||| ||  u
   UCGGUUGC CCACGU ACUgu ag  g
ACC        G      A     -  ca 


Annotation confidence Not enough data
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Genome context
ABKE03000094.1: 922890-922947 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppc-mir-8303-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8303-5p

Accession MIMAT0033127
Description Pristionchus pacificus ppc-miR-8303-5p mature miRNA
Sequence 1 - AAGCUGACGGGGUGUAAUGACA - 22
Evidence experimental
Illumina [1]

Mature ppc-miR-8303-3p

Accession MIMAT0033128
Description Pristionchus pacificus ppc-miR-8303-3p mature miRNA
Sequence 37 - UCAAUGCACCGCGUUGGCUCCA - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260