miRBase entry: ppc-mir-8307

Stem-loop ppc-mir-8307


Accession
MI0027000
Description
Pristionchus pacificus ppc-mir-8307 precursor miRNA


Sequence

UAUGAGACUGCCGUCCUCAACCaaaguugcagugcguUUGAGUUUAUGGUAGUGUCAUAGC
(((((.((((((((.(((((.....((......))..)))))...)))))))).)))))..

Structure
--     G        --C     CCaaa  ug 
  UAUGA ACUGCCGU   CUCAA     gu  c
  ||||| ||||||||   |||||     ||   
  AUACU UGAUGGUA   GAGUU     cg  a
CG     G        UUU     ---ug  ug 


Annotation confidence Not enough data
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Genome context
ABKE03000073.1: 235868-235928 [-]
Clustered miRNAs
13 other miRNAs are < 10 kb from ppc-mir-8307
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8307-5p

Accession MIMAT0033140
Description Pristionchus pacificus ppc-miR-8307-5p mature miRNA
Sequence 1 - UAUGAGACUGCCGUCCUCAACC - 22
Evidence experimental
Illumina [1]

Mature ppc-miR-8307-3p

Accession MIMAT0033141
Description Pristionchus pacificus ppc-miR-8307-3p mature miRNA
Sequence 38 - UUGAGUUUAUGGUAGUGUCAUAGC - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260