Stem-loop sequence ppc-mir-8307

Accession

MI0027000 (change log)

Description

Pristionchus pacificus miR-8307 stem-loop

Stem-loop

   --     g        --c     ccaaa  ug 
5'   uauga acugccgu   cucaa     gu  c
     ||||| ||||||||   |||||     ||   
3'   auacu ugauggua   gaguu     cg  a
   cg     g        uuu     ---ug  ug 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (El_Paco; GCA_000180635.3): ABKE03000073.1: 235868-235928 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ppc-mir-8307

• ppc-mir-8300: ABKE03000073.1: 238228-238291 [-]
• ppc-mir-8352: ABKE03000073.1: 237989-238049 [-]
• ppc-mir-8255: ABKE03000073.1: 237101-237162 [-]
• ppc-mir-8356a: ABKE03000073.1: 236205-236266 [-]
• ppc-mir-8356b: ABKE03000073.1: 236097-236161 [-]
• ppc-mir-8307: ABKE03000073.1: 235868-235928 [-]
• ppc-mir-8274: ABKE03000073.1: 234904-234962 [-]
• ppc-mir-8320: ABKE03000073.1: 227746-227804 [+]
• ppc-mir-8358: ABKE03000073.1: 227347-227413 [+]
• ppc-mir-8282c: ABKE03000073.1: 227223-227281 [+]
• ppc-mir-8282a: ABKE03000073.1: 226753-226811 [+]
• ppc-mir-8282b: ABKE03000073.1: 226545-226603 [+]
• ppc-mir-8348: ABKE03000073.1: 226430-226488 [+]
• ppc-mir-8299: ABKE03000073.1: 226063-226119 [+]

Database links

• miRBase Tracker:MI0027000

Mature sequence ppc-miR-8307-5p

• Accession: MIMAT0033140
• Sequence: 1 - uaugagacugccguccucaacc - 22
• Evidence: experimental; Illumina [1]

Mature sequence ppc-miR-8307-3p

• Accession: MIMAT0033141
• Sequence: 38 - uugaguuuaugguagugucauagc - 61
• Evidence: experimental; Illumina [1]

References

1. PMID:23729632 "Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes" Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C Genome Biol Evol. 5:1246-1260(2013).