miRBase entry: ppc-mir-8311

Stem-loop ppc-mir-8311

Accession

MI0027006

Description

Pristionchus pacificus ppc-mir-8311 precursor miRNA

Sequence

UGAUUGUGAGAUUCCCAAAUUGaauaccguauucaaugucaAUUUGAGUCUCGCACAGUCACA
((((((((((((((....((((((((...))))))))........))))))))))..))))..

Structure

--    --          ----CCAA        c 
  UGAU  UGUGAGAUUC        AUUGaaua  
  ||||  ||||||||||        |||||||| c
  ACUG  ACGCUCUGAG        uaacuuau  
AC    AC          UUUAacug        g

Annotation confidence Not enough data

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Genome context

ABKE03000003.1: 125411-125473 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-8311

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8311-5p

Accession	MIMAT0033152
Description	Pristionchus pacificus ppc-miR-8311-5p mature miRNA
Sequence	1 - UGAUUGUGAGAUUCCCAAAUUG - 22
Evidence	experimental SOLiD [1]

Mature ppc-miR-8311-3p

Accession	MIMAT0033153
Description	Pristionchus pacificus ppc-miR-8311-3p mature miRNA
Sequence	42 - AUUUGAGUCUCGCACAGUCACA - 63
Evidence	experimental SOLiD [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260