miRBase entry: ppc-mir-8313

Stem-loop ppc-mir-8313


Accession
MI0027008
Description
Pristionchus pacificus ppc-mir-8313 precursor miRNA


Sequence

AUCCGCAAAAACUACUAGUAGACCacauuuggaugcggCCCUAGUAGUUAUUUGCGGAUCA
((((((((((((((((((..(.((.(((....))).))).))))))))).)))))))))..

Structure
--         -         UA A  a   u 
  AUCCGCAAA AACUACUAG  G CC cau u
  ||||||||| |||||||||  | || |||  
  UAGGCGUUU UUGAUGAUC  C gg gua g
AC         A         -C -  c   g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
ABKE03000107.1: 3747592-3747652 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from ppc-mir-8313
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8313-5p

Accession MIMAT0033156
Description Pristionchus pacificus ppc-miR-8313-5p mature miRNA
Sequence 1 - AUCCGCAAAAACUACUAGUAGACC - 24
Evidence experimental
Illumina [1]

Mature ppc-miR-8313-3p

Accession MIMAT0033157
Description Pristionchus pacificus ppc-miR-8313-3p mature miRNA
Sequence 39 - CCCUAGUAGUUAUUUGCGGAUCA - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260