miRBase entry: ppc-mir-8315-1

Stem-loop ppc-mir-8315-1

Accession

MI0027014

Description

Pristionchus pacificus ppc-mir-8315-1 precursor miRNA

Gene family

MIPF0002039; mir-8315

Sequence

GUCCUCAAACAUUCUGGUAUUUCGCaaauugaaaagcgAUACCAGUCUGGAUGAGGCUGA
(.(((((..((..((((((..((((..........))))))))))..))..))))))...

Structure

--- U     AA  UU      UU    aaau 
   G CCUCA  CA  CUGGUA  UCGC    u
   | |||||  ||  ||||||  ||||     
   C GGAGU  GU  GACCAU  Agcg    g
AGU -     AG  CU      --    aaaa

Annotation confidence Not enough data

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Genome context

ABKE03000107.1: 3747283-3747342 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppc-mir-8315-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8315-5p

Accession	MIMAT0033167
Description	Pristionchus pacificus ppc-miR-8315-5p mature miRNA
Sequence	1 - GUCCUCAAACAUUCUGGUAUUUCGC - 25
Evidence	experimental Illumina [1]

Mature ppc-miR-8315-3p

Accession	MIMAT0033168
Description	Pristionchus pacificus ppc-miR-8315-3p mature miRNA
Sequence	39 - AUACCAGUCUGGAUGAGGCUGA - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260