miRBase entry: ppc-mir-8320

Stem-loop ppc-mir-8320


Accession
MI0027021
Description
Pristionchus pacificus ppc-mir-8320 precursor miRNA


Sequence

AAUCCGAGCUUCGGCCUGUGACAcgggacgaaguugUCACUAGACCGAGCAGGGGUUCA
(((((..(((.(((.(((((((((........).)))))).)).))))))..)))))..

Structure
--     GA   U   C  -      - ggg 
  AAUCC  GCU CGG CU GUGACA c   a
  |||||  ||| ||| || |||||| |    
  UUGGG  CGA GCC GA CACUgu g   c
AC     GA   -   A  U      u aag 


Annotation confidence Not enough data
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Genome context
ABKE03000073.1: 227746-227804 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from ppc-mir-8320
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8320-5p

Accession MIMAT0033180
Description Pristionchus pacificus ppc-miR-8320-5p mature miRNA
Sequence 1 - AAUCCGAGCUUCGGCCUGUGACA - 23
Evidence experimental
Illumina [1]

Mature ppc-miR-8320-3p

Accession MIMAT0033181
Description Pristionchus pacificus ppc-miR-8320-3p mature miRNA
Sequence 37 - UCACUAGACCGAGCAGGGGUUCA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260