miRBase entry: ppc-mir-8322

Stem-loop ppc-mir-8322


Accession
MI0027023
Description
Pristionchus pacificus ppc-mir-8322 precursor miRNA


Sequence

CCGACCACUUUUAUCUUUCAUCCauccuucaguuaugaggCUGAAAGAUAAAUUGGCCGAUA
.((.(((..(((((((((((.((.....(((....))))).))))))))))).))).))...

Structure
--C  A   CU           U  auccu   g 
   CG CCA  UUUAUCUUUCA CC     uca u
   || |||  ||||||||||| ||     |||  
   GC GGU  AAAUAGAAAGU gg     agu u
AUA  C   -U           C  -----   a 


Annotation confidence Not enough data
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Genome context
ABKE03000052.1: 388703-388764 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppc-mir-8322
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8322-5p

Accession MIMAT0033184
Description Pristionchus pacificus ppc-miR-8322-5p mature miRNA
Sequence 1 - CCGACCACUUUUAUCUUUCAUCC - 23
Evidence experimental
Illumina [1]

Mature ppc-miR-8322-3p

Accession MIMAT0033185
Description Pristionchus pacificus ppc-miR-8322-3p mature miRNA
Sequence 41 - CUGAAAGAUAAAUUGGCCGAUA - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260